Dates: 9th – 10th March 2017
Venue: ETH Zurich
Department of Biosystems Science and Engineering (D-BSSE)
Room: Misrock seminar room, ground floor (close to the building entrance).
How to go there: https://www.bsse.ethz.ch/department/locations.html
Thursday, March 9th 2017
|08:15||Registration and coffee|
|09:00 – 09:10||Welcome. Wolfgang Huber and Niko Beerenwinkel|
Session I, scientific presentations
(20’ presentation + 10’ discussion)
|09:10 – 09:45||Differential discovery in high dimensional cytometry datasets.
Mark Robinson (University of Zurich)
|09:45 – 10:20||Identifying early-branching genes from single cell expression data.
Magnus Rattray (University of Manchester)
|10:20 – 10:35||Introduction to the SOUND project. Wolfgang Huber (EMBL Heidelberg)|
|10:35 – 11:00||Coffee break|
|11:00 – 11:30||Computational methods for genome-based precision oncology.
Niko Beerenwinkel (ETH Zurich)
|11:30 – 12:00||Multi-omics opportunities and challenges in the management of advanced melanoma. Mitch Levesque (USZ)|
|12:00 – 13:30||Group photo and lunch|
Session II, scientific presentations
|13:30 – 14:00||Computational approaches for diagnosis of rare disorders using transcriptome sequencing. Julien Gagneur (TUM)|
|14:00 – 14:30||Systematic statistical analysis of multi-omics data identified novel disease genes. Holger Prokisch (TUM-MED)|
|14:30 – 15:00||Automatic parallelization of bioinformatic workflows: Challenges and results. Alexander Bertram (BDD)|
|15:00 – 15:20||Coffee break|
|15:20 – 15:50||Functional classification of disease by integration of drug perturbation phenotyping and multi-omics. Wolfgang Huber (EMBL Heidelberg)|
|15:50 – 16:20||High throughput screening to assess signaling dependency of primary blood cancer cells. Thorsten Zenz (DKFZ)|
|16:20 – 16:50||Computational infrastructure to support SOUND dissemination.
Martin Morgan (RPCI)
|16:50 – 17:10||Break|
|17:10 – 17:40||Structured sparse models and outlier detection for multi-omics patient data analysis. Susana Vinga (IDMEC)|
|17:40 – 18:30||Steering Committee meeting (WP-leaders and their representatives)|
|20:00||Dinner at Kohlmanns. Am Barfüsserplatz im Stadtcasino.
Steinenberg 14, Basel.
Friday, March 10th 2017
Session III, parallel meetings
|09:00 – 09:30||Open-source software for the standardised application of existing methods in ctDNA data analysis. Daniele Biasci (UCAM)|
|09:30 – 10:05||Translational Oncology at the National Center for Tumor Diseases Heidelberg. Christof von Kalle (NCT Heidelberg)|
|10:05 – 10:40||Data-driven Precision Oncology. Michael Krauthammer (Yale School of Medicine)|
|10:40 – 11:00||Coffee break|
|11:00 – 11:45||Scientific Advisory Board private meeting and preparation of the SAB report. Euler Meeting Raum P.60, building 1058, ground floor|
|11:45 – 12:15||SAB feedback and discussion with the consortium. All|
|12:15 – 12:30||Emerging topics|