Technologies, data analytical approaches and biomedical / clinical applications.
Organisers: Wolfgang Huber, Niko Beerenwinkel, John Marioni and Oliver Stegle
Dates
28 and 29 August: Scientific Workshop
27 August, 13:00h – 18:00h: satellite meeting for the SOUND consortium
Venue
BioQuant
Im Neuenheimer Feld 267
Ruprecht-Karls-Universität Heidelberg
Heidelberg
How to get to BioQuant
By car:
Coming from the motorway (A 656): Turn left towards “Chirurgie” at the end of the Autobahn. Having crossed the Neckar on Ernst-Waltz-Brücke follow Berliner Straße. At the 2nd traffic light (“Shell” gas station & “Bunsengymnasium”) turn left towards Neuenheimer Feld (BioQuant 267).
By public transport:
From main railway station (Hauptbahnhof): Take either the tram number 24 (direction Handschuhsheim) or the number 21 (direction Technologiepark) and get off at the “Bunsengymnasium” stop.
From Heidelberg downtown (Bismarckplatz): Take the bus number 31 towards “Neuenheim, Chirurgische Klinik” and get off at the “Bunsengymnasium” bus stop.
Confirmed speakers
- Simon Anders, ZMBH Heidelberg
- Tim Becker, Broad Institute of MIT and Harvard, Cambridge
- Michael Boutros, DKFZ Heidelberg
- Laleh Haghverdi, EMBL Heidelberg
- Thomas Höfer, DKFZ Heidelberg
- Smita Krishnaswamy, Yale School of Medicine, USA
- Aaron Lun, Cancer Research UK Cambridge Institute
- Svetlana Ovchinnikova, ZMBH Heidelberg
- Lucas Pelkmans, University of Zurich
- Wolf Reik, Babraham Institute Cambridge
- Charlotte Soneson, University of Zurich
- Oliver Stegle, EMBL Heidelberg
- Barbara Treutlein, Max Planck Institute for Evolutionary Anthropology, Leipzig
- Britta Velten, EMBL Heidelberg
- Lars Velten, EMBL Heidelberg
Registration
Registration for this workshop is closed and the event is fully booked. Spontaneous registrations on site are not possible.
Programme
Tuesday, 28 August 2018
09:00 – 09:10 | Welcome. Organisers |
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09:10 – 9:50 | Multiplexed protein maps link subcellular organization to cellular states. Lucas Pelkmans |
9:50 – 10:30 | Manifold learning yields insight into complex cellular state space. Smita Krishnaswamy |
10:30 – 11:00 | Coffee break |
11:00 – 11:40 | Extendable benchmarks and reproducible exploration for scRNA-seq data. Charlotte Soneson |
11:40 – 12:20 | From Targeting Diseases to Characterizing Asthma. Tim Becker |
12:20 – 13:20 | Lunch |
13:20 – 14:00 | Reconstructing cellular transitions using single cell transcriptomics. Barbara Treutlein |
14:00 – 14:40 | Combining somatic heterogeneity with scRNA-sew. Oliver Stegle |
14:40 – 15:00 | Coffee break |
15:00 – 15:40 | Batch correction in scRNA-seq data. Laleh Haghverdi |
15:40 – 15:50 | Break |
15:50 – 17:00 | Tutorial: Visual interactive exploration of omics data. Simon Anders and Svetlana Ovchinnikova |
17:00 – 19:00 | Free time |
19:00 | Dinner (for the SOUND consortium and invited speakers only) |
Wednesday, 29 August 2018
9:00 – 9:40 | Single cell epigenome landscape of mammalian development and ageing. Wolf Reik |
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9:40 – 10:20 | Mapping context-dependent genetic circuits of cells. Michael Boutros |
10:20 – 10:50 | Coffee break |
10:50 – 11:30 | DNA barcoding to decode hematopoietic development. Thomas Hoefer |
11:30 – 12:10 | Spatial transcriptomics reveals design principles of the haematopoietic stem cell niche. Lars Velten |
12:10 – 13:15 | Lunch |
13:15 – 16:00 | Tutorial: End-to-end workflow for single cell RNA-Seq analysis. Aaron Lun |
15:00 – 15:30 | Coffee break |
16:00 – 17:00 | Tutorial: Multi-Omics Factor Analysis. Britta Velten |
17:00 | End of the workshop |
Monday 27 August 2018
SOUND Consortium Meeting (15’ presentation + 5’ discussion)
12:00 | Registration and sandwich lunch |
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13:00 | Welcome. Wolfgang Huber |
13:10 – 13:30 | WP 8 and 10. Martin Morgan (RPCCC) |
13:30 – 13:50 | WP 9. Alexander Bertram (BDD) |
13:50 – 14:10 | WP 4. Niko Beerenwinkel (ETH Zurich) |
14:10 – 14:25 | Break |
14:25 – 14:45 | WP 4. Susana Vinga (IDMEC) |
14:45 – 15:05 | WP 2. Daniele Biasci (UCAM) |
15:05 – 15:35 | Coffee break |
15:35 – 15:55 | WP 6. Mitch Levesque and Phil Cheng (USZ) |
15:55 – 16:15 | WP 5. Thorsten Zenz (DKFZ and USZ) |
16:15 – 16:35 | WP 1. Junyan Lu and Jennifer Hüllein (EMBL) |
16:35 – 17:15 | Discussion and wrap-up. All |
17:15 – 19:00 | Free time |
19:00 | Dinner (for the SOUND consortium and invited speakers only) |
For inquiries related to the registration, scientific program and organisation, please contact Simone Bell, simone.bell(at)embl.de at European Molecular Biology Laboratory (EMBL), Heidelberg.